Contents:
Introduction
Installation
Examples
Tutorial 0: Data Preparation
Tutorial 1: Single-Cell Resolution Spatial Transcriptomics (seqFISH, Xenium, or MERSCOPE etc.)
Tutorial 2: Slide-seqV2, Slide-tags, or Stereo-seq
API Reference
Frequently Asked Questions (FAQ)
NiCo
Overview: module code
All modules for which code is available
nico_annotations.Annotations
nico_annotations.utils.SCTransform
nico_covariations.Covariations
nico_covariations.utils.pyliger_utilities
nico_interactions.Interactions
utils.SCTransform